STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1893Hypothetical protein containing Peptidase_M54 domain; COG1913. (234 aa)    
Predicted Functional Partners:
CL1_1892
Hypothetical protein; COG1689.
       0.821
CL1_1889
Hypothetical protein.
       0.791
CL1_1890
Hypothetical protein.
       0.791
CL1_1891
Hypothetical protein; COG2610.
       0.791
CL1_1886
Hypothetical protein; COG1993.
 
     0.694
CL1_1971
Glycosyl transferase family 2 protein 3; COG0463.
       0.657
crcB
Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.650
fau-1
RNA-binding protein FAU-1; Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences.
  
     0.549
CL1_1496
Hypothetical protein; COG2090.
  
     0.493
CL1_1006
Hypothetical protein; COG2433.
  
     0.474
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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