STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1898Amino acid transporter; COG0531. (743 aa)    
Predicted Functional Partners:
CL1_0937
Trk-type pottasium transport system, NAD-binding component; COG0569.
  
  
 0.862
gap
Putative glyceraldehyde-3-phosphate dehydrogenase; COG0057.
  
 
 0.858
CL1_1601
Asparagine synthase; COG0367.
  
 
 0.855
CL1_0638
Glutamate synthase beta chain-related oxidoreductase containing 2Fe-2S and 4Fe-4S clusters; COG0493.
  
  
 0.836
CL1_1851
Cadmium-translocating P-type ATPase; COG2217.
     
 0.824
CL1_1208
Carbamate kinase-like carbamoyl phosphate synthetase; COG0549; Belongs to the carbamate kinase family.
  
  
 0.816
CL1_1808
Proton/glutamate symporter; COG1301.
 
 
 0.814
purD
Phosphoribosylamine-glycine ligase; COG0151; Belongs to the GARS family.
  
  
 0.796
CL1_0091
Pullulanase type II; COG0366.
  
 0.782
CL1_0884
Cyclomaltodextrinase; COG0366.
  
 0.782
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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