CL1_1904 protein (Thermococcus cleftensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CL1_1904

Oligosaccharyl transferase, STT3 subunit; COG1287. (960 aa)

Predicted Functional Partners:

glmS

0.918

CL1_1906

0.828

CL1_0507

0.706

CL1_0415

0.625

CL1_0376

0.612

CL1_0366

0.601

CL1_0494

0.571

CL1_1964

0.567

CL1_0230

0.565

rpl35ae

0.561

Your Current Organism:

Thermococcus cleftensis

NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CL1_0230	CL1_0366	CL1_0230	CL1_0366	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	Putative arginase; COG0010; Belongs to the arginase family.	0.410
CL1_0230	CL1_0376	CL1_0230	CL1_0376	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	CRISPR-associated CXXC_CXXC protein Cst1.	0.510
CL1_0230	CL1_0415	CL1_0230	CL1_0415	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	Phospho-sugar mutase-like protein; COG1109.	0.430
CL1_0230	CL1_0507	CL1_0230	CL1_0507	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	Glycosyl transferase family protein 6; COG1807.	0.511
CL1_0230	CL1_1904	CL1_0230	CL1_1904	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	Oligosaccharyl transferase, STT3 subunit; COG1287.	0.565
CL1_0230	CL1_1964	CL1_0230	CL1_1964	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	Hypothetical protein; COG1672.	0.487
CL1_0230	rpl35ae	CL1_0230	CL1_0099	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	50S ribosomal protein L35Ae; COG2451; Belongs to the eukaryotic ribosomal protein eL33 family.	0.821
CL1_0366	CL1_0230	CL1_0366	CL1_0230	Putative arginase; COG0010; Belongs to the arginase family.	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	0.410
CL1_0366	CL1_0376	CL1_0366	CL1_0376	Putative arginase; COG0010; Belongs to the arginase family.	CRISPR-associated CXXC_CXXC protein Cst1.	0.519
CL1_0366	CL1_0415	CL1_0366	CL1_0415	Putative arginase; COG0010; Belongs to the arginase family.	Phospho-sugar mutase-like protein; COG1109.	0.670
CL1_0366	CL1_0494	CL1_0366	CL1_0494	Putative arginase; COG0010; Belongs to the arginase family.	Hypothetical protein; COG1226.	0.408
CL1_0366	CL1_0507	CL1_0366	CL1_0507	Putative arginase; COG0010; Belongs to the arginase family.	Glycosyl transferase family protein 6; COG1807.	0.686
CL1_0366	CL1_1904	CL1_0366	CL1_1904	Putative arginase; COG0010; Belongs to the arginase family.	Oligosaccharyl transferase, STT3 subunit; COG1287.	0.601
CL1_0366	CL1_1964	CL1_0366	CL1_1964	Putative arginase; COG0010; Belongs to the arginase family.	Hypothetical protein; COG1672.	0.552
CL1_0376	CL1_0230	CL1_0376	CL1_0230	CRISPR-associated CXXC_CXXC protein Cst1.	Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.	0.510
CL1_0376	CL1_0366	CL1_0376	CL1_0366	CRISPR-associated CXXC_CXXC protein Cst1.	Putative arginase; COG0010; Belongs to the arginase family.	0.519
CL1_0376	CL1_0415	CL1_0376	CL1_0415	CRISPR-associated CXXC_CXXC protein Cst1.	Phospho-sugar mutase-like protein; COG1109.	0.601
CL1_0376	CL1_0494	CL1_0376	CL1_0494	CRISPR-associated CXXC_CXXC protein Cst1.	Hypothetical protein; COG1226.	0.544
CL1_0376	CL1_0507	CL1_0376	CL1_0507	CRISPR-associated CXXC_CXXC protein Cst1.	Glycosyl transferase family protein 6; COG1807.	0.697
CL1_0376	CL1_1904	CL1_0376	CL1_1904	CRISPR-associated CXXC_CXXC protein Cst1.	Oligosaccharyl transferase, STT3 subunit; COG1287.	0.612