STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1908Hypothetical protein; COG4346. (462 aa)    
Predicted Functional Partners:
CL1_1907
Hypothetical protein; COG0500.
 
     0.698
CL1_1763
Hypothetical protein; COG1672.
  
     0.638
CL1_1909
Putative ATPase (AAA+ superfamily) 11; COG1672.
       0.634
CL1_1964
Hypothetical protein; COG1672.
  
     0.624
CL1_0053
Putative ATPase (AAA+ superfamily) 4; COG1672.
  
     0.602
CL1_1438
Putative ATPase (AAA+ superfamily) 3; COG1672.
  
     0.601
CL1_1226
Putative ATPase (AAA+ superfamily) 2; COG1672.
  
     0.572
CL1_0823
Putative ATPase (AAA+ superfamily) 1; COG1672.
  
     0.536
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
     0.530
CL1_0230
Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome.
  
     0.442
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.