STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1942COG1409. (508 aa)    
Predicted Functional Partners:
CL1_1943
Hypothetical protein; COG0517.
     
 0.819
CL1_1944
Hypothetical protein; COG0121.
       0.716
CL1_1945
Restriction endonuclease, type I; COG2810.
 
     0.653
cpgS
Putative cyclic 2,3-diphosphoglycerate synthetase; Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP.
 
     0.632
CL1_1126
RNA-binding protein containing THUMP domain; COG1818.
  
     0.512
pgk2
Putative 2-phosphoglycerate kinase; COG2074.
 
     0.490
CL1_0359
RNA binding protein containing KH domain; COG0195.
 
     0.478
hisI
Hypothetical protein; COG0139; In the N-terminal section; belongs to the PRA-CH family.
     
 0.463
CL1_0182
Hypothetical protein; COG1817.
  
     0.458
CL1_1346
Putative transcription regulator, penicillinase repressor family; COG3682.
 
     0.456
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.