STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1946Hydrogenase expression/formation protein HypE 3; COG0309. (330 aa)    
Predicted Functional Partners:
CL1_0486
Hydrogenase expression/formation protein hypD; COG0409.
 
 
 0.834
CL1_1948
Putative ATPase RIL; COG1245.
       0.759
CL1_0487
Hydrogenase maturation protein HypF; COG0068.
 
 
 0.707
CL1_0485
Hydrogenase expression/formation protein HypC; COG0298.
  
 
 0.681
CL1_0242
Transcription regulator, ArsR family 3; COG0640.
 
     0.649
CL1_0241
Hypothetical protein.
       0.585
hypA
Hydrogenase nickel incorporation protein HypA/HybF; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.558
CL1_1947
Hypothetical protein; COG2247.
       0.539
CL1_1151
Coenzyme F420 hydrogenase subunit alpha (frhA); COG3259.
 
   
 0.487
CL1_1121
Hypothetical protein; COG4720.
 
    0.442
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.