STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1952CRISPR-associated Cas6 family protein 3; COG1583. (242 aa)    
Predicted Functional Partners:
CL1_1951
Hypothetical protein.
       0.790
CL1_1950
Hypothetical protein.
       0.773
CL1_1953
CRISPR-associated protein, Csm1 family; COG1353.
 
   
 0.556
CL1_1313
Replication factor C small subunit; COG1372.
  
     0.555
CL1_1956
CRISPR-associated RAMP protein, Csm4 family; COG1567.
 
   
 0.546
CL1_1410
Hypothetical protein; COG1542.
  
     0.524
CL1_0924
Hypothetical protein; COG0037.
 
     0.504
CL1_1700
Hypothetical protein.
  
     0.471
CL1_1957
CRISPR-associated RAMP protein, Csm5 family; COG1332.
 
     0.465
CL1_1955
CRISPR-associated RAMP protein, Csm3 family; COG1337.
 
   
 0.464
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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