STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htpXPutative heat shock protein HtpX 1; COG0501; Belongs to the peptidase M48B family. (290 aa)    
Predicted Functional Partners:
CL1_1989
Chaperonin subunit alpha; COG0459; Belongs to the TCP-1 chaperonin family.
  
 
 0.705
CL1_0073
Permease, Auxin efflux carrier protein-like protein; COG0679.
  
  
 0.600
htpX-2
Putative heat shock protein HtpX 2; COG0501; Belongs to the peptidase M48B family.
 
    
0.563
CL1_1196
GHMP kinase 2; COG1829.
  
    0.509
alaS
alanyl-tRNA synthetase 2; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.498
CL1_1987
Putative Mn2+-dependent serine/threonine protein kinase; COG3642.
       0.462
CL1_1992
Hypothetical protein; COG1228.
       0.441
CL1_0927
alanyl-tRNA synthetase 1; COG2872.
  
    0.419
CL1_1810
Hypothetical protein containing alanyl tRNA synthase domain; COG2872.
  
    0.419
CL1_1988
Hypothetical protein; COG0620.
       0.403
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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