STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_2003GNAT family acetyltransferase 5; COG1670. (176 aa)    
Predicted Functional Partners:
tiaS
Hypothetical protein; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
       0.803
CL1_1898
Amino acid transporter; COG0531.
  
  
 0.654
CL1_2004
Hypothetical protein; COG1395.
       0.653
CL1_0825
Pleiotropic regulatory protein, pyridoxal-phosphate-dependent aminotransferase (degT); COG0399; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.528
CL1_0824
Hypothetical protein containing Trimeric LpxA-like domain; COG0110.
     
 0.509
CL1_1601
Asparagine synthase; COG0367.
 
    0.477
CL1_1733
Hypothetical protein; COG1357.
 
  
 0.459
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
  
  
 0.419
CL1_1998
Glucose-1-dehydrogenase; COG1028.
 
   
 0.401
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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