STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP27305.1Hypothetical protein; Pfam: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; SMART: S-adenosyl-L-homocysteine hydrolase, NAD binding domain. (354 aa)    
Predicted Functional Partners:
ANP28096.1
Hypothetical protein; Pfam: NUDIX domain.
   
  0.840
ANP27303.1
PRINTS: Senescence marker protein-30 (SMP30) family signature; Pfam: SMP-30/Gluconolaconase/LRE-like region.
     
 0.697
ANP27304.1
acyl-CoA thioesterase II; Pfam: Thioesterase-like superfamily.
       0.661
rpmA
TIGRFAM: L27: ribosomal protein L27; PRINTS: Ribosomal protein L27 signature; Pfam: Ribosomal L27 protein; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.652
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.652
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.649
ANP27059.1
Pfam: Aldehyde dehydrogenase family; Pfam: Iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.634
ANP27306.1
TIGRFAM: therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family; Pfam: Shikimate kinase.
     
 0.630
ANP27087.1
TIGRFAM: rplB_bact: ribosomal protein L2; Pfam: Ribosomal Proteins L2, C-terminal domain; Pfam: Ribosomal Proteins L2, RNA binding domain.
    
   0.623
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
   0.613
Your Current Organism:
Dermabacter vaginalis
NCBI taxonomy Id: 1630135
Other names: D. vaginalis, DSM 100050, Dermabacter sp. AD1-86, Dermabacter vaginalis Chang et al. 2016, KCTC 39585, strain AD1-86
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.