yfkM protein (Gemmata sp. SHPL17) - STRING interaction network

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second shell of interactors

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

yfkM

General stress protein 18. (182 aa)

Predicted Functional Partners:

nqo1_1

0.666

rpsJ

0.534

rplN

0.499

rplE

0.451

rpsS

0.449

frdB_1

0.437

frdB_2

0.437

tsaA

0.422

rsbV

0.403

Your Current Organism:

Gemmata sp. SHPL17

NCBI taxonomy Id: 1630693
Other names: G. sp. SH-PL17, Gemmata sp. SH-PL17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
frdB_1	frdB_2	VT84_14765	VT84_27370	Fumarate reductase iron-sulfur subunit.	Fumarate reductase iron-sulfur subunit.	0.900
frdB_1	nqo1_1	VT84_14765	VT84_08365	Fumarate reductase iron-sulfur subunit.	NADH-quinone oxidoreductase subunit 1.	0.969
frdB_1	yfkM	VT84_14765	VT84_27345	Fumarate reductase iron-sulfur subunit.	General stress protein 18.	0.437
frdB_2	frdB_1	VT84_27370	VT84_14765	Fumarate reductase iron-sulfur subunit.	Fumarate reductase iron-sulfur subunit.	0.900
frdB_2	nqo1_1	VT84_27370	VT84_08365	Fumarate reductase iron-sulfur subunit.	NADH-quinone oxidoreductase subunit 1.	0.969
frdB_2	yfkM	VT84_27370	VT84_27345	Fumarate reductase iron-sulfur subunit.	General stress protein 18.	0.437
nqo1_1	frdB_1	VT84_08365	VT84_14765	NADH-quinone oxidoreductase subunit 1.	Fumarate reductase iron-sulfur subunit.	0.969
nqo1_1	frdB_2	VT84_08365	VT84_27370	NADH-quinone oxidoreductase subunit 1.	Fumarate reductase iron-sulfur subunit.	0.969
nqo1_1	yfkM	VT84_08365	VT84_27345	NADH-quinone oxidoreductase subunit 1.	General stress protein 18.	0.666
rplE	rplN	VT84_31450	VT84_31460	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.998
rplE	rpsJ	VT84_31450	VT84_31510	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.989
rplE	rpsS	VT84_31450	VT84_31490	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.993
rplE	yfkM	VT84_31450	VT84_27345	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	General stress protein 18.	0.451
rplN	rplE	VT84_31460	VT84_31450	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.998
rplN	rpsJ	VT84_31460	VT84_31510	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.990
rplN	rpsS	VT84_31460	VT84_31490	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.994
rplN	yfkM	VT84_31460	VT84_27345	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	General stress protein 18.	0.499
rpsJ	rplE	VT84_31510	VT84_31450	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.989
rpsJ	rplN	VT84_31510	VT84_31460	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.990
rpsJ	rpsS	VT84_31510	VT84_31490	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.997