STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV28536.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
AMV29977.1
Von Willebrand factor type A domain protein.
  
     0.724
ligA_2
DNA ligase.
 
     0.701
AMV27411.1
DinB family protein.
  
     0.689
ybiA_1
Swarming motility protein YbiA.
  
     0.665
AMV28737.1
Hypothetical protein.
  
     0.600
dnaK_3
Chaperone protein DnaK; Belongs to the heat shock protein 70 family.
       0.572
AMV23751.1
Poly (ADP-ribose) glycohydrolase (PARG).
  
     0.570
lip
Lipase precursor.
  
     0.539
AMV26619.1
Hypothetical protein.
  
     0.520
AMV28006.1
Hypothetical protein.
  
     0.516
Your Current Organism:
Gemmata sp. SHPL17
NCBI taxonomy Id: 1630693
Other names: G. sp. SH-PL17, Gemmata sp. SH-PL17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.