STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGR6A_Lc100060Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
AGR6A_Lc90012
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.758
AGR6A_pAt60154
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.750
AGR6A_pa10016
Putative transcriptional regulatory protein, LysR family putative peroxide resistance protein PerR; Belongs to the LysR transcriptional regulatory family.
  
     0.744
ptxR-2
HTH-type transcriptional regulator PtxR; Belongs to the LysR transcriptional regulatory family.
  
     0.740
AGR6A_Lc160113
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.739
AGR6A_pAt60152
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.738
AGR6A_Lc100043
Transcriptional regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.726
AGR6A_Lc90092
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.703
AGR6A_pAt60171
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.694
AGR6A_Lc90112
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.685
Your Current Organism:
Agrobacterium sp. NCPPB925
NCBI taxonomy Id: 1631629
Other names: A. sp. NCPPB 925, Agrobacterium genomosp. 6 str. NCPPB 925, Agrobacterium sp. NCPPB 925
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