STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traR-3Transcriptional activator protein TraR. (234 aa)    
Predicted Functional Partners:
AGR6A_Lc90513
Two component sensor kinase/response regulator hybrid.
   
 0.958
AGR6A_Lc90514
Two component sensor kinase/response regulator hybrid.
   
 0.958
AGR6A_pAt60139
PAS/PAC sensor hybrid histidine kinase.
   
 0.853
AGR6A_Cc50026
Histidine kinase.
   
 0.830
traI-4
Acyl-homoserine-lactone synthase.
 
  
 0.823
traI-2
Acyl-homoserine-lactone synthase.
 
  
 0.822
traI-3
Acyl-homoserine-lactone synthase.
 
  
 0.822
AGR6A_Cc80279
Two component sensor kinase.
   
 0.797
AGR6A_Cc140054
LuxR family transcriptional regulator.
  
 0.796
AGR6A_Cc170027
Putative two component sensor kinase.
   
 0.732
Your Current Organism:
Agrobacterium sp. NCPPB925
NCBI taxonomy Id: 1631629
Other names: A. sp. NCPPB 925, Agrobacterium genomosp. 6 str. NCPPB 925, Agrobacterium sp. NCPPB 925
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.