STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_1Putative ABC transporter ATP-binding protein YbhF. (250 aa)    
Predicted Functional Partners:
AMV16656.1
ABC-2 family transporter protein.
 
 
 0.986
AMV16811.1
ABC-2 family transporter protein.
 
 
 0.911
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
  
  
 
0.908
AMV16654.1
Hypothetical protein.
  
    0.670
ftsH1
ATP-dependent zinc metalloprotease FtsH 1.
  
     0.613
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
     
0.572
AMV16662.1
ABC-type uncharacterized transport system.
  
 
 0.549
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.516
rsmA_1
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.510
ftsH_4
ATP-dependent zinc metalloprotease FtsH.
  
   0.507
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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