STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV16715.1Leucine Rich repeats (2 copies). (432 aa)    
Predicted Functional Partners:
AMV22347.1
Hypothetical protein.
  
     0.771
AMV16486.1
Hypothetical protein.
  
     0.725
AMV17053.1
Leucine Rich repeats (2 copies).
  
     0.725
AMV21922.1
Prenyltransferase and squalene oxidase repeat protein.
  
     0.659
AMV17853.1
Ribonuclease Z.
  
     0.651
AMV17233.1
Hypothetical protein.
  
     0.619
AMV21504.1
Hypothetical protein; Activator of Hsp90 ATPase homolog 1-like protein.
  
     0.596
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.531
nanM_3
N-acetylneuraminate epimerase.
  
     0.507
AMV19688.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.