STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspE_2Putative type II secretion system protein E. (578 aa)    
Predicted Functional Partners:
epsF_4
Type II secretion system protein F.
 
 0.952
epsF_3
Type II secretion system protein F.
 
 0.909
epsF_5
Type II secretion system protein F.
 
 0.909
epsF_6
Type II secretion system protein F.
 
 0.909
epsF_7
Type II secretion system protein F.
 
 
 0.909
rsbU_3
Phosphoserine phosphatase RsbU.
  
 
 0.880
rsbU_1
Phosphoserine phosphatase RsbU.
  
 
 0.862
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.849
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.842
adrA_1
Putative diguanylate cyclase AdrA.
  
  
 0.841
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.