STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speE_1Spermidine synthase. (835 aa)    
Predicted Functional Partners:
speE_3
Spermidine synthase.
 
  
 
0.931
mtnN
Aminodeoxyfutalosine nucleosidase.
    
 0.919
ramA_1
(R)-stereoselective amidase.
  
 
 0.907
AMV21309.1
N-carbamoyl-D-amino acid hydrolase.
  
 
 0.907
atsA_12
Arylsulfatase.
 
     0.683
fliM
Flagellar motor switch protein FliM.
    
   0.626
pkn1_4
Serine/threonine-protein kinase pkn1.
 
     0.618
AMV19133.1
Hypothetical protein.
 
     0.608
AMV19134.1
Von Willebrand factor type A domain protein.
 
     0.589
AMV19136.1
Hypothetical protein.
 
     0.567
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.