AMV19193.1 protein (Planctomyces sp. SHPL14)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMV19193.1

Hypothetical protein. (247 aa)

Predicted Functional Partners:

AMV19194.1

0.506

AMV19937.1

0.488

AMV17408.1

0.469

AMV19192.1

0.458

AMV21110.1

0.420

Your Current Organism:

Planctomyces sp. SHPL14

NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMV17408.1	AMV19193.1	VT03_05920	VT03_14985	Hypothetical protein.	Hypothetical protein.	0.469
AMV17408.1	AMV19937.1	VT03_05920	VT03_18715	Hypothetical protein.	Matrixin.	0.766
AMV17408.1	AMV21110.1	VT03_05920	VT03_24620	Hypothetical protein.	Trehalose utilization.	0.651
AMV19192.1	AMV19193.1	VT03_14980	VT03_14985	Hypothetical protein.	Hypothetical protein.	0.458
AMV19193.1	AMV17408.1	VT03_14985	VT03_05920	Hypothetical protein.	Hypothetical protein.	0.469
AMV19193.1	AMV19192.1	VT03_14985	VT03_14980	Hypothetical protein.	Hypothetical protein.	0.458
AMV19193.1	AMV19194.1	VT03_14985	VT03_14990	Hypothetical protein.	18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.	0.506
AMV19193.1	AMV19937.1	VT03_14985	VT03_18715	Hypothetical protein.	Matrixin.	0.488
AMV19193.1	AMV21110.1	VT03_14985	VT03_24620	Hypothetical protein.	Trehalose utilization.	0.420
AMV19194.1	AMV19193.1	VT03_14990	VT03_14985	18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.	Hypothetical protein.	0.506
AMV19937.1	AMV17408.1	VT03_18715	VT03_05920	Matrixin.	Hypothetical protein.	0.766
AMV19937.1	AMV19193.1	VT03_18715	VT03_14985	Matrixin.	Hypothetical protein.	0.488
AMV19937.1	AMV21110.1	VT03_18715	VT03_24620	Matrixin.	Trehalose utilization.	0.769
AMV21110.1	AMV17408.1	VT03_24620	VT03_05920	Trehalose utilization.	Hypothetical protein.	0.651
AMV21110.1	AMV19193.1	VT03_24620	VT03_14985	Trehalose utilization.	Hypothetical protein.	0.420
AMV21110.1	AMV19937.1	VT03_24620	VT03_18715	Trehalose utilization.	Matrixin.	0.769

Network Stats

number of nodes:

11

number of edges:

43

average node degree:

7.82

avg. local clustering coefficient:

0.849

expected number of edges:

19

PPI enrichment p-value:

1.35e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042559

Pteridine-containing compound biosynthetic process

3 of 10

2.8

2.82

6.50e-06

GO:0019752

Carboxylic acid metabolic process

8 of 422

1.6

2.74

5.49e-09

GO:0032787

Monocarboxylic acid metabolic process

5 of 159

1.82

2.45

2.43e-06

GO:0009072

Aromatic amino acid family metabolic process

3 of 26

2.38

2.24

5.72e-05

GO:0044281

Small molecule metabolic process

9 of 765

1.39

2.2

5.49e-09

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016646

Oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor

3 of 13

2.68

2.55

1.93e-05

GO:0016747

Acyltransferase activity, transferring groups other than amino-acyl groups

5 of 138

1.88

2.41

4.92e-06

GO:0070404

NADH binding

2 of 2

3.32

1.99

0.00026

GO:0070402

NADPH binding

2 of 2

3.32

1.99

0.00026

GO:0004155

6,7-dihydropteridine reductase activity

2 of 2

3.32

1.99

0.00026

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0110165

Cellular anatomical entity

11 of 9316

0.39

0.28

0.0300

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:11741

Mixed, incl. Fatty acyl-CoA biosynthesis, and Short-chain dehydrogenase/reductase SDR

9 of 190

2.0

5.25

2.32e-14

CL:11786

ChREBP activates metabolic gene expression, and Fatty acid synthase activity

5 of 23

2.66

4.76

8.02e-10

CL:12104

Phenylalanine metabolism, and eNOS activation

4 of 7

3.08

4.61

3.56e-09

CL:11788

Fatty acid biosynthesis, and Polyketide synthase, ketoreductase domain

4 of 13

2.81

4.22

1.37e-08

CL:11804

Fatty acid biosynthesis

2 of 5

2.92

1.86

0.00042

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00790

Folate biosynthesis

5 of 39

2.43

4.5

1.16e-09

map00061

Fatty acid biosynthesis

2 of 12

2.54

1.67

0.00085

map01100

Metabolic pathways

11 of 2264

1.01

1.29

1.16e-09

map01212

Fatty acid metabolism

2 of 45

1.97

1.1

0.0075

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-196854

Metabolism of vitamins and cofactors

5 of 148

1.85

2.5

2.29e-06

MAP-163765

ChREBP activates metabolic gene expression

3 of 31

2.31

2.14

8.13e-05

MAP-196849

Metabolism of water-soluble vitamins and cofactors

4 of 105

1.9

2.07

4.30e-05

MAP-8978868

Fatty acid metabolism

4 of 107

1.89

2.06

4.30e-05

MAP-199220

Vitamin B5 (pantothenate) metabolism

3 of 38

2.22

2.03

0.00012

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005737

Cytoplasm

9 of 2924

0.81

0.71

0.00029

GOCC:0005622

Intracellular

10 of 6691

0.5

0.36

0.0090

GOCC:0110165

Cellular anatomical entity

11 of 8287

0.44

0.35

0.0051

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0596

Phosphopantetheine

3 of 33

2.28

2.03

0.00013

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00106

Short chain dehydrogenase

3 of 10

2.8

2.45

3.18e-05

PF13469

Sulfotransferase family

2 of 9

2.67

1.16

0.0078

PF02801

Beta-ketoacyl synthase, C-terminal domain

2 of 16

2.42

1.0

0.0145

PF00109

Beta-ketoacyl synthase, N-terminal domain

2 of 16

2.42

1.0

0.0145

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036291

NAD(P)-binding domain superfamily

6 of 239

1.72

2.34

2.18e-06

IPR013968

Polyketide synthase, ketoreductase domain

3 of 22

2.46

1.86

0.00034

IPR020806

Polyketide synthase, phosphopantetheine-binding domain

3 of 29

2.34

1.76

0.00048

IPR009081

Phosphopantetheine binding ACP domain

3 of 34

2.27

1.72

0.00056

IPR036736

ACP-like superfamily

3 of 35

2.25

1.71

0.00056

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00823

Phosphopantetheine attachment site

2 of 17

2.39

1.04

0.0123

SM00822

This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.

2 of 18

2.37

1.04

0.0123

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About