STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpA_2Transposase for transposon Tn5. (479 aa)    
Predicted Functional Partners:
fdm_2
Formaldehyde dismutase.
       0.773
fdm_3
Formaldehyde dismutase.
       0.773
AMV19236.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.689
AMV17862.1
Hypothetical protein.
  
     0.555
AMV17861.1
Hypothetical protein.
  
     0.488
mnmE_3
tRNA modification GTPase MnmE.
  
     0.485
AMV20240.1
Hypothetical protein.
  
     0.465
AMV19290.1
Hypothetical protein.
  
     0.431
AMV18759.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.