STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copR_3Transcriptional activator protein CopR. (234 aa)    
Predicted Functional Partners:
czcS
Sensor protein CzcS precursor.
  0.996
cusS_2
Sensor kinase CusS.
  0.984
tmoS_3
Sensor histidine kinase TmoS.
  
 
0.962
luxQ_9
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.944
barA_4
Signal transduction histidine-protein kinase BarA.
  
 
0.943
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.938
luxQ_7
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
0.932
tmoS_2
Sensor histidine kinase TmoS; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
0.914
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.909
copR_2
Transcriptional activator protein CopR.
  
  
 
0.907
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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