STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV19826.1Cellulose synthase subunit BcsC. (380 aa)    
Predicted Functional Partners:
AMV19363.1
Tetratricopeptide repeat protein.
  
     0.761
AMV21279.1
Cellulose synthase subunit BcsC.
  
     0.761
yrrB_2
TPR repeat-containing protein YrrB.
  
     0.760
AMV18431.1
Photosystem I assembly protein Ycf3.
  
     0.750
yrrB_1
TPR repeat-containing protein YrrB.
  
     0.749
nlpI_1
Lipoprotein NlpI precursor.
  
     0.743
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.715
AMV19024.1
Lipoprotein NlpI.
  
     0.680
AMV21989.1
Cellulose synthase subunit BcsC.
  
     0.618
AMV20981.1
Ankyrin repeats (3 copies).
  
  0.581
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.