STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaC_3Poly-beta-1,6-N-acetyl-D-glucosamine synthase. (380 aa)    
Predicted Functional Partners:
AMV18170.1
Polysaccharide deacetylase.
 
  
 0.662
wecA
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
   
 0.629
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
    
 0.578
AMV20284.1
ATP-dependent DNA ligase.
       0.574
AMV19707.1
Polysaccharide deacetylase.
 
  
 0.560
crnA
Creatinine amidohydrolase.
  
  
 0.535
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.475
AMV16985.1
Polysaccharide deacetylase.
  
  
 0.465
AMV21493.1
Hypothetical protein.
  
  
 0.465
barA_1
Signal transduction histidine-protein kinase BarA.
 
  
 0.444
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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