STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxA_4Thioredoxin. (1178 aa)    
Predicted Functional Partners:
msrA2
Peptide methionine sulfoxide reductase MsrA 2; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
 0.975
AMV20555.1
tRNA-anti-like protein.
  
 
 0.862
cycA1
Cytochrome c-554 precursor.
 
     0.837
smc_7
Chromosome partition protein Smc.
 
     0.764
AMV16814.1
Transposase DDE domain protein.
  
     0.750
AMV18943.1
Transposase DDE domain protein.
  
     0.750
AMV20984.1
Transposase DDE domain protein.
  
     0.750
AMV21886.1
Transposase DDE domain protein.
  
     0.750
AMV21943.1
Transposase DDE domain protein.
  
     0.750
resA_4
Thiol-disulfide oxidoreductase ResA.
  
 
 0.728
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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