STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV20582.1Hypothetical protein. (375 aa)    
Predicted Functional Partners:
dagK
Diacylglycerol kinase.
    
  0.905
dgkA
Undecaprenol kinase.
     
  0.900
ubiE_4
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
     
  0.900
AMV21224.1
Hypothetical protein.
     
  0.900
desA
Delta(12)-fatty-acid desaturase.
 
     0.847
AMV20583.1
Hypothetical protein.
 
     0.832
AMV20581.1
Hypothetical protein.
       0.785
AMV22246.1
Patatin-like phospholipase.
  
     0.643
shc_1
Squalene--hopene cyclase.
  
     0.597
AMV21226.1
Trehalose utilization.
  
     0.560
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.