STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolD_5Lipoprotein-releasing system ATP-binding protein LolD. (250 aa)    
Predicted Functional Partners:
macB_9
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.974
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
   0.951
AMV21016.1
Outer membrane-specific lipoprotein transporter subunit LolE.
 
   0.949
macA_6
Macrolide export protein MacA.
 
   0.790
ytrB_2
ABC transporter ATP-binding protein YtrB.
  
     0.709
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
   0.602
lolE
Lipoprotein-releasing system transmembrane protein LolE.
  
   0.599
macB_3
Macrolide export ATP-binding/permease protein MacB.
  
   0.596
macB_6
Macrolide export ATP-binding/permease protein MacB.
  
   0.592
macB_8
Macrolide export ATP-binding/permease protein MacB.
  
   0.528
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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