STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdaHHistone deacetylase-like amidohydrolase. (313 aa)    
Predicted Functional Partners:
AMV17613.1
SET domain protein.
  
 0.899
pao
Pseudooxynicotine oxidase.
   
 0.887
AMV18955.1
Protoporphyrinogen oxidase.
   
 0.887
AMV16865.1
ATP-dependent helicase HepA.
    
 0.723
AMV16880.1
ATP-dependent helicase HepA.
    
 0.723
AMV17417.1
ATP-dependent helicase HepA.
    
 0.723
AMV21401.1
ATP-dependent helicase HepA.
    
 0.723
cobB
NAD-dependent protein deacetylase.
    
 
 0.703
AMV20770.1
Hypothetical protein.
    
 0.680
AMV21041.1
Trans-aconitate 2-methyltransferase.
    
 0.680
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.