STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhD-threo-aldose 1-dehydrogenase. (312 aa)    
Predicted Functional Partners:
fucU
L-fucose mutarotase; Belongs to the RbsD / FucU family.
 
     0.626
AMV20973.1
Amidohydrolase.
    0.574
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.424
aqpZ2
Aquaporin Z 2; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.424
ytbE
Putative oxidoreductase YtbE.
 
 
 0.423
petJ
Cytochrome c6.
  
     0.417
yjjN
Putative L-galactonate oxidoreductase.
  
    0.417
ptlH_1
1-deoxypentalenic acid 11-beta-hydroxylase.
  
     0.412
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.