STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV21856.1Putative permease YjgP/YjgQ family protein. (372 aa)    
Predicted Functional Partners:
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
   
 0.984
AMV16841.1
Putative permease YjgP/YjgQ family protein.
 
  
  0.862
AMV19891.1
Outer membrane porin HofQ; Belongs to the bacterial secretin family.
  
    0.770
AMV21082.1
Bacterial type II/III secretion system short domain protein.
  
    0.758
AMV19479.1
Hypothetical protein.
 
    0.748
AMV22032.1
Hypothetical protein; YTV.
  
    0.747
AMV17716.1
Outer membrane efflux protein.
  
     0.739
AMV21979.1
Xylose isomerase-like TIM barrel.
  
     0.727
AMV18737.1
Hypothetical protein.
  
     0.702
AMV22088.1
RDD family protein.
 
     0.699
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.