STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV22649.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
crtP
Diapolycopene oxygenase.
   
 0.963
crtQ
4,4'-diaponeurosporenoate glycosyltransferase.
 
     0.949
carC
All-trans-zeta-carotene desaturase.
   
 0.880
drrA_2
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
    0.778
AMV22652.1
ABC-2 family transporter protein.
       0.773
AMV22653.1
Hypothetical protein.
 
     0.675
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase.
 
   
 0.589
pgaC_4
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
 
    0.502
AMV18560.1
Beta-monoglucosyldiacylglycerol synthase.
 
    0.495
pyrDB
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
   
    0.457
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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