STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV22741.1Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)    
Predicted Functional Partners:
ycdF
Glucose 1-dehydrogenase 2.
  
 
   0.761
fabG_4
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.741
fabG_11
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.733
ptlI_1
Pentalenene oxygenase; Belongs to the cytochrome P450 family.
  
 
 0.543
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
      0.533
fabG_8
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
   0.510
sdh_1
Serine 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.484
AMV22740.1
Planctomycete cytochrome C.
       0.445
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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