STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omcB_2Large cysteine-rich periplasmic protein OmcB; Serovar E precursor. (830 aa)    
Predicted Functional Partners:
AMV21019.1
LysM domain/BON superfamily protein.
  
 
   0.755
AMV19891.1
Outer membrane porin HofQ; Belongs to the bacterial secretin family.
  
    0.738
rpoA_2
DNA-directed RNA polymerase subunit alpha.
 
 
 
 0.712
AMV16631.1
VWA domain containing CoxE-like protein.
  
     0.699
AMV21681.1
Hypothetical protein.
  
     0.696
AMV21856.1
Putative permease YjgP/YjgQ family protein.
  
     0.668
AMV22032.1
Hypothetical protein; YTV.
  
     0.663
AMV21083.1
Hypothetical protein; YTV.
  
     0.649
aroE_2
Shikimate dehydrogenase.
  
     0.643
AMV19479.1
Hypothetical protein.
  
     0.639
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.