STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCX44393.1Quinoprotein amine dehydrogenase, beta chain-like protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (747 aa)    
Predicted Functional Partners:
soxX
Sulfur oxidation c-type cytochrome SoxX; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.966
A9R16_03980
Cell filamentation protein Fic; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.929
OCX45634.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.890
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.835
OCX45151.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.779
A9R16_07270
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.778
A9R16_03290
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.772
OCX43850.1
Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.759
OCX46391.1
Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.759
OCX45857.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.733
Your Current Organism:
Acidiferrobacter thiooxydans
NCBI taxonomy Id: 163359
Other names: A. thiooxydans, Acidiferrobacter thiooxydans Hallberg et al. 2011, Acidithiobacillus ferrooxidans DSM 2392, DSM 2392, JCM 17358, Thiobacillus ferrooxidans DSM 2392, iron-oxidizing acidophile m-1, strain m-1
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