STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANA14093.1Peptide deformylase; Cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
ANA14094.1
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.899
ANA14092.1
rpsU-divergently transcribed protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.848
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.819
ANA14101.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.806
ANA14253.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.805
ANA13917.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.804
ANA13488.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.799
ANA14044.1
Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.793
ANA14098.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.790
ANA13536.1
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.787
Your Current Organism:
Acetobacter oryzifermentans
NCBI taxonomy Id: 1633874
Other names: A. oryzifermentans, Acetobacter sp. SLV-7, JCM 31096, KACC 19301, strain SLV-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.