STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO57413.1tRNA (guanine-N7)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
KOO59290.1
seryl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.980
KOO60022.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.915
rpmD
50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.833
KOO59498.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.827
KOO59616.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.816
KOO57725.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.816
KOO57412.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
KOO58810.1
16S rRNA methyltransferase; Catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.793
KOO59919.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.785
KOO57411.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
Your Current Organism:
Rheinheimera sp. KL1
NCBI taxonomy Id: 1635005
Other names: R. sp. KL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.