STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XD78_1703Type IV pilus assembly protein PilM. (353 aa)    
Predicted Functional Partners:
XD78_1704
Fimbrial assembly family protein.
  
 0.971
XD78_1705
Hypothetical protein.
 
 
 0.907
XD78_0103
Fimbrial assembly family protein.
  
 0.877
XD78_0068
Type II secretion system F domain protein.
 
 
 
 0.812
XD78_0067
Twitching motility protein.
 
   
 0.721
XD78_2186
Twitching motility protein.
 
   
 0.721
XD78_0066
General secretory pathway protein E.
 
 
 
 0.706
XD78_2185
General secretory pathway protein E.
 
 
 
 0.683
XD78_0104
Hypothetical protein.
 
 
 0.624
XD78_1269
DNA internalization-related competence protein ComEC/Rec2.
  
   
 0.585
Your Current Organism:
Desulfotomaculum sp. 46296
NCBI taxonomy Id: 1635262
Other names: D. sp. 46_296, Desulfotomaculum sp. 46_296
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.