STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XD76_0158Transcription elongation protein nusA (N utilization substance protein A) (L factor). (441 aa)    
Predicted Functional Partners:
XD76_1639
DNA-directed RNA polymerase subunit beta.
 
 0.998
XD76_1710
DNA-directed RNA polymerase subunit alpha.
 
 0.998
XD76_1640
DNA-directed RNA polymerase subunit beta'.
 
 0.997
XD76_1635
50S ribosomal protein L11.
  
 
 0.993
XD76_0159
Translation initiation factor IF-2.
  
 0.989
XD76_1634
Transcription antitermination protein nusG.
 
 0.987
XD76_1683
30S ribosomal protein S10.
 
 0.984
XD76_1642
30S ribosomal protein S7.
 
 
 0.979
XD76_1049
30S ribosomal protein S2.
  
 
 0.971
XD76_1641
30S ribosomal protein S12, chloroplastic.
  
 
 0.970
Your Current Organism:
candidate division TA06 bacterium 32111
NCBI taxonomy Id: 1635278
Other names: c. division TA06 bacterium 32_111, candidate division TA06 bacterium 32_111
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