STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XD76_0180UDP-glucose 4-epimerase. (336 aa)    
Predicted Functional Partners:
XD76_0179
NAD-dependent epimerase/dehydratase.
 
 
 0.985
XD76_0178
UDP-N-acetylglucosamine 2-epimerase.
 
 
 0.934
XD76_0982
Capsular exopolysaccharide family.
  
 
 0.856
XD76_1159
Capsular exopolysaccharide family.
  
 
 0.856
XD76_0712
Glycosyl transferase family 2.
  
 
 0.817
XD76_1367
Putative glycosyltransferase.
  
 
 0.817
XD76_1243
Putative pyridoxal phosphate-dependent enzyme.
 
 
 0.777
XD76_1163
DegT/DnrJ/EryC1/StrS aminotransferase.
 
 
 0.732
XD76_0981
Soluble ligand binding domain-containing protein.
  
 
 0.722
XD76_0491
Pleiotropic regulatory protein.
 
 
 0.710
Your Current Organism:
candidate division TA06 bacterium 32111
NCBI taxonomy Id: 1635278
Other names: c. division TA06 bacterium 32_111, candidate division TA06 bacterium 32_111
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