STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XD76_0549NAD-reducing hydrogenase subunit HoxF. (540 aa)    
Predicted Functional Partners:
XD76_0417
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 0.999
XD76_0543
Fe-S cluster domain protein.
   
 0.999
XD76_0546
NADP-reducing hydrogenase, subunit A.
 0.999
XD76_0550
NADH-quinone oxidoreductase chain e.
 0.999
XD76_0552
[Fe] hydrogenase (Fe-only hydrogenase) (Ferredoxin bidirectional hydrogenase), subunit alpha.
 0.999
XD76_0147
NADH-quinone oxidoreductase subunit D.
  
 0.998
XD76_0416
NADH-ubiquinone oxidoreductase chain D.
 
 0.998
XD76_0143
Hypothetical protein.
  
 0.997
XD76_0414
NADH-quinone oxidoreductase, B subunit.
  
 0.997
XD76_0146
NADH dehydrogenase (Ubiquinone) 30 kDa subunit.
  
 0.995
Your Current Organism:
candidate division TA06 bacterium 32111
NCBI taxonomy Id: 1635278
Other names: c. division TA06 bacterium 32_111, candidate division TA06 bacterium 32_111
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