XD60_0806 protein (Acetothermia bacterium 6432)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XD60_0806

50S ribosomal protein L20. (118 aa)

Predicted Functional Partners:

XD60_0085

0.996

XD60_0810

0.996

XD60_0377

0.995

XD60_0807

0.995

XD60_0812

0.995

XD60_0346

0.994

XD60_0957

0.994

XD60_1054

0.994

XD60_1582

0.994

XD60_0381

0.993

Your Current Organism:

Acetothermia bacterium 6432

NCBI taxonomy Id: 1635286
Other names: A. bacterium 64_32, Acetothermia bacterium 64_32

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
XD60_0085	XD60_0346	50S ribosomal protein L13.	30S ribosomal protein S2.	0.997
XD60_0085	XD60_0377	50S ribosomal protein L13.	50S ribosomal protein L19.	0.994
XD60_0085	XD60_0381	50S ribosomal protein L13.	30S ribosomal protein S16.	0.994
XD60_0085	XD60_0806	50S ribosomal protein L13.	50S ribosomal protein L20.	0.996
XD60_0085	XD60_0807	50S ribosomal protein L13.	Translation initiation factor IF-3.	0.943
XD60_0085	XD60_0810	50S ribosomal protein L13.	50S ribosomal protein L27.	0.996
XD60_0085	XD60_0812	50S ribosomal protein L13.	LSU ribosomal protein L21p.	0.994
XD60_0085	XD60_0957	50S ribosomal protein L13.	30S ribosomal protein S9.	0.997
XD60_0085	XD60_1054	50S ribosomal protein L13.	30S ribosomal protein S18.	0.993
XD60_0085	XD60_1582	50S ribosomal protein L13.	50S ribosomal protein L1.	0.997
XD60_0346	XD60_0085	30S ribosomal protein S2.	50S ribosomal protein L13.	0.997
XD60_0346	XD60_0377	30S ribosomal protein S2.	50S ribosomal protein L19.	0.994
XD60_0346	XD60_0381	30S ribosomal protein S2.	30S ribosomal protein S16.	0.998
XD60_0346	XD60_0806	30S ribosomal protein S2.	50S ribosomal protein L20.	0.994
XD60_0346	XD60_0807	30S ribosomal protein S2.	Translation initiation factor IF-3.	0.967
XD60_0346	XD60_0810	30S ribosomal protein S2.	50S ribosomal protein L27.	0.993
XD60_0346	XD60_0812	30S ribosomal protein S2.	LSU ribosomal protein L21p.	0.993
XD60_0346	XD60_0957	30S ribosomal protein S2.	30S ribosomal protein S9.	0.999
XD60_0346	XD60_1054	30S ribosomal protein S2.	30S ribosomal protein S18.	0.998
XD60_0346	XD60_1582	30S ribosomal protein S2.	50S ribosomal protein L1.	0.997