STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV40527.1Putative major pilin subunit. (387 aa)    
Predicted Functional Partners:
AMV37656.1
Competence protein A.
 
    0.654
AMV39930.1
Hypothetical protein.
  
     0.632
AMV37654.1
Outer membrane porin HofQ; Belongs to the bacterial secretin family.
  
    0.551
bamD_1
Outer membrane protein assembly factor BamD.
 
     0.549
AMV38998.1
Hypothetical protein.
  
     0.542
AMV40723.1
Hypothetical protein.
  
     0.498
AMV36709.1
Hypothetical protein.
  
     0.493
AMV36964.1
Hypothetical protein.
  
     0.486
AMV40607.1
BNR/Asp-box repeat protein.
  
     0.481
AMV39509.1
Hypothetical protein.
  
     0.474
Your Current Organism:
Planctomyces sp. SHPL62
NCBI taxonomy Id: 1636152
Other names: P. sp. SH-PL62, Planctomyces sp. SH-PL62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.