STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971135_00555Unannotated protein. (749 aa)    
Predicted Functional Partners:
GCA_000971135_00310
Unannotated protein.
    
 
 0.998
GCA_000971135_00074
Unannotated protein.
 
 
   0.996
GCA_000971135_00306
Unannotated protein.
   
   0.996
GCA_000971135_00312
Unannotated protein.
    
   0.996
GCA_000971135_00313
Unannotated protein.
    
   0.996
GCA_000971135_00316
Unannotated protein.
    
   0.996
GCA_000971135_01571
Unannotated protein.
  
   0.985
GCA_000971135_00292
Unannotated protein.
   
 
 0.983
GCA_000971135_00336
Unannotated protein.
   
 
 0.981
GCA_000971135_01569
Unannotated protein.
  
 
   0.980
Your Current Organism:
Lysinimicrobium flavum
NCBI taxonomy Id: 1638981
Other names: DSM 28150, L. flavum, Lysinimicrobium flavum Hamada et al. 2015, Lysinimicrobium sp. HI12-45, Lysinimicrobium sp. NBRC 109391, NBRC 109391, strain HI12-45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.