STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971135_01278Unannotated protein. (418 aa)    
Predicted Functional Partners:
GCA_000971135_01277
Unannotated protein.
 
     0.846
GCA_000971135_00132
Unannotated protein.
 
 0.834
GCA_000971135_01279
Unannotated protein.
       0.827
GCA_000971135_01280
Unannotated protein.
       0.778
GCA_000971135_00134
Unannotated protein.
 
  
 0.758
GCA_000971135_01281
Unannotated protein.
       0.752
GCA_000971135_00136
Unannotated protein.
 
 
 0.743
GCA_000971135_01276
Unannotated protein.
 
    0.735
GCA_000971135_01282
Unannotated protein.
       0.724
GCA_000971135_00131
Unannotated protein.
  
 
 0.621
Your Current Organism:
Lysinimicrobium flavum
NCBI taxonomy Id: 1638981
Other names: DSM 28150, L. flavum, Lysinimicrobium flavum Hamada et al. 2015, Lysinimicrobium sp. HI12-45, Lysinimicrobium sp. NBRC 109391, NBRC 109391, strain HI12-45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.