STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971375_00314Unannotated protein. (53 aa)    
Predicted Functional Partners:
GCA_000971375_00313
Unannotated protein.
     
 0.823
GCA_000971375_00312
Unannotated protein.
       0.773
GCA_000971375_00316
Unannotated protein.
 
   
 0.661
GCA_000971375_01872
Unannotated protein.
  
     0.626
GCA_000971375_00483
Unannotated protein.
  
     0.595
GCA_000971375_00601
Unannotated protein.
  
     0.544
GCA_000971375_00315
Unannotated protein.
       0.514
GCA_000971375_01773
Unannotated protein.
  
     0.491
GCA_000971375_01774
Unannotated protein.
  
     0.478
GCA_000971375_01695
Unannotated protein.
  
     0.466
Your Current Organism:
Lysinimicrobium aestuarii
NCBI taxonomy Id: 1638982
Other names: DSM 28144, L. aestuarii, Lysinimicrobium aestuarii Hamada et al. 2015, Lysinimicrobium sp. HI12-100, Lysinimicrobium sp. HI12-104, Lysinimicrobium sp. HI12-140, Lysinimicrobium sp. NBRC 109392, Lysinimicrobium sp. NBRC 109398, Lysinimicrobium sp. NBRC 110048, NBRC 109392, strain HI12-104
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.