STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971375_00828Unannotated protein. (253 aa)    
Predicted Functional Partners:
GCA_000971375_00829
Unannotated protein.
 
 0.984
GCA_000971375_00330
Unannotated protein.
 
 
 0.964
GCA_000971375_02008
Unannotated protein.
  
  0.908
GCA_000971375_00827
Unannotated protein.
 
     0.904
GCA_000971375_00963
Unannotated protein.
 
     
0.892
GCA_000971375_00508
Unannotated protein.
 
      0.886
GCA_000971375_00826
Unannotated protein.
 
    0.884
GCA_000971375_00630
Unannotated protein.
 
   
  0.784
GCA_000971375_01894
Unannotated protein.
   
 
0.778
GCA_000971375_01583
Unannotated protein.
 
  0.746
Your Current Organism:
Lysinimicrobium aestuarii
NCBI taxonomy Id: 1638982
Other names: DSM 28144, L. aestuarii, Lysinimicrobium aestuarii Hamada et al. 2015, Lysinimicrobium sp. HI12-100, Lysinimicrobium sp. HI12-104, Lysinimicrobium sp. HI12-140, Lysinimicrobium sp. NBRC 109392, Lysinimicrobium sp. NBRC 109398, Lysinimicrobium sp. NBRC 110048, NBRC 109392, strain HI12-104
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.