STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971375_02703Unannotated protein. (909 aa)    
Predicted Functional Partners:
GCA_000971375_02701
Unannotated protein.
       0.840
GCA_000971375_02702
Unannotated protein.
       0.840
GCA_000971375_02700
Unannotated protein.
       0.777
GCA_000971375_02705
Unannotated protein.
 
     0.742
GCA_000971375_02698
Unannotated protein.
 
     0.718
GCA_000971375_02704
Unannotated protein.
       0.709
GCA_000971375_02699
Unannotated protein.
 
     0.691
GCA_000971375_02697
Unannotated protein.
 
     0.636
GCA_000971375_02696
Unannotated protein.
  
    0.624
GCA_000971375_01761
Unannotated protein.
  
     0.615
Your Current Organism:
Lysinimicrobium aestuarii
NCBI taxonomy Id: 1638982
Other names: DSM 28144, L. aestuarii, Lysinimicrobium aestuarii Hamada et al. 2015, Lysinimicrobium sp. HI12-100, Lysinimicrobium sp. HI12-104, Lysinimicrobium sp. HI12-140, Lysinimicrobium sp. NBRC 109392, Lysinimicrobium sp. NBRC 109398, Lysinimicrobium sp. NBRC 110048, NBRC 109392, strain HI12-104
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.