STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971175_00875Unannotated protein. (201 aa)    
Predicted Functional Partners:
GCA_000971175_00876
Unannotated protein.
       0.787
GCA_000971175_00874
Unannotated protein.
       0.664
GCA_000971175_01979
Unannotated protein.
    
   0.663
GCA_000971175_01578
Unannotated protein.
     
 0.601
GCA_000971175_01689
Unannotated protein.
 
 
 
 0.580
GCA_000971175_01992
Unannotated protein.
     
 0.458
GCA_000971175_01872
Unannotated protein.
 
     0.451
GCA_000971175_01906
Unannotated protein.
 
    0.413
GCA_000971175_01693
Unannotated protein.
     
 0.409
Your Current Organism:
Demequina pelophila
NCBI taxonomy Id: 1638984
Other names: D. pelophila, DSM 28148, Demequina pelophila (Hamada et al. 2015) Nouioui et al. 2018, Lysinimicrobium pelophilum, Lysinimicrobium pelophilum Hamada et al. 2015, Lysinimicrobium sp. HI12-111, Lysinimicrobium sp. NBRC 109393, NBRC 109393, strain HI12-111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.