STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971175_01452Unannotated protein. (185 aa)    
Predicted Functional Partners:
GCA_000971175_01451
Unannotated protein.
       0.794
GCA_000971175_01453
Unannotated protein.
       0.794
GCA_000971175_01450
Unannotated protein.
       0.792
GCA_000971175_01454
Unannotated protein.
       0.784
GCA_000971175_00520
Unannotated protein.
 
     0.773
GCA_000971175_01067
Unannotated protein.
  
     0.768
GCA_000971175_00645
Unannotated protein.
  
     0.744
GCA_000971175_01545
Unannotated protein.
  
     0.737
GCA_000971175_01871
Unannotated protein.
  
     0.728
GCA_000971175_00505
Unannotated protein.
  
     0.681
Your Current Organism:
Demequina pelophila
NCBI taxonomy Id: 1638984
Other names: D. pelophila, DSM 28148, Demequina pelophila (Hamada et al. 2015) Nouioui et al. 2018, Lysinimicrobium pelophilum, Lysinimicrobium pelophilum Hamada et al. 2015, Lysinimicrobium sp. HI12-111, Lysinimicrobium sp. NBRC 109393, NBRC 109393, strain HI12-111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.