STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971455_01999Unannotated protein. (67 aa)    
Predicted Functional Partners:
GCA_000971455_01113
Unannotated protein.
  
   
 0.773
GCA_000971455_01971
Unannotated protein.
    
  0.732
GCA_000971455_01774
Unannotated protein.
   
 0.706
GCA_000971455_02004
Unannotated protein.
   
 0.706
GCA_000971455_02520
Unannotated protein.
   
 0.706
GCA_000971455_02564
Unannotated protein.
   
 0.706
GCA_000971455_02432
Unannotated protein.
   
   0.692
GCA_000971455_02309
Unannotated protein.
    
 0.679
GCA_000971455_02456
Unannotated protein.
   
   0.671
GCA_000971455_02084
Unannotated protein.
   
 
 0.669
Your Current Organism:
Lysinimicrobium rhizosphaerae
NCBI taxonomy Id: 1638985
Other names: DSM 28152, L. rhizosphaerae, Lysinimicrobium rhizosphaerae Hamada et al. 2015, Lysinimicrobium sp. HI12-114, Lysinimicrobium sp. HI12-121, Lysinimicrobium sp. HI12-135, Lysinimicrobium sp. NBRC 109397, Lysinimicrobium sp. NBRC 110049, Lysinimicrobium sp. NBRC 110050, NBRC 109397, strain HI12-135
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.