STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971215_01028Unannotated protein. (417 aa)    
Predicted Functional Partners:
GCA_000971215_00610
Unannotated protein.
    
  0.870
GCA_000971215_02140
Unannotated protein.
  
 
  0.700
GCA_000971215_02163
Unannotated protein.
    
  0.688
GCA_000971215_01029
Unannotated protein.
       0.643
GCA_000971215_00865
Unannotated protein.
   
   0.638
GCA_000971215_00688
Unannotated protein.
   
 
  0.528
GCA_000971215_00738
Unannotated protein.
    
  0.462
GCA_000971215_01556
Unannotated protein.
    
  0.441
GCA_000971215_02735
Unannotated protein.
    
  0.410
Your Current Organism:
Lysinimicrobium luteum
NCBI taxonomy Id: 1638988
Other names: DSM 28147, L. luteum, Lysinimicrobium luteum Hamada et al. 2015, Lysinimicrobium sp. HI12-123, Lysinimicrobium sp. NBRC 109395, NBRC 109395, strain HI12-123
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.